Stem-loop dme-mir-288

Accession

MI0000384

Description

Drosophila melanogaster dme-mir-288 precursor miRNA

Sequence

2 reads, 2 reads per million, 2 experiments

cggccaugucguaauuagcggagcacggcaucgccggcgauaauuaaugacgguggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
(((((.((((((....((.((((..((((((.(((((((........((((....)))))))))))...)))))).)))).))..)))))).)))))

Structure

     a      aauu  c    ca      --c       auaauuaa    g 
cggcc ugucgu    ag ggag  cggcau   gccggcg        ugac g
||||| ||||||    || ||||  ||||||   |||||||        ||||  
gccgg acaGUA    UU CUUU  GCUGUA   Ugguugc        acug u
     c      --CU  A    -A      CUU       --------    g 

Annotation confidence Not enough data

Comments

This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context

chr2L: 20618366-20618462 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dme-mir-288

Mature dme-miR-288-3p

• Accession: MIMAT0000363
• Description: Drosophila melanogaster dme-miR-288-3p mature miRNA
• Sequence: 66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42