Stem-loop dme-mir-289

Accession

MI0000385

Description

Drosophila melanogaster dme-mir-289 precursor miRNA

Literature search

3 open access papers mention dme-mir-289
(33 sentences)

Sequence

gaguuuacaguaaaaUAAAUAUUUAAGUGGAGCCUGCGACUucagucccucugacugacugggguaagucacuugagcguuuguuggcacguaaaagac
...(((((.((..(((((((.(((((((((.((((..(...((((((.....)))))))..))))...))))))))).)))))))...)))))))....

Structure

-gag     a  -aa       A         --A    GC ACU      c 
    uuuac gu   aaUAAAU UUUAAGUGG   GCCU  G   ucaguc c
    ||||| ||   ||||||| |||||||||   ||||  |   |||||| u
    aaaug ca   uuguuug gaguucacu   uggg  c   agucag c
caga     -  cgg       c         gaa    gu ---      u 

Annotation confidence Low

Comments

This sequence is computationally predicted based on conservation in D. pseudoobscura. The precise 5' or 3' ends are unknown. Northern blotting confirmed that the strand containing the predicted miR is predominantly expressed.

Genome context

chr3L: 13620822-13620920 [+]

Mature dme-miR-289-5p

• Accession: MIMAT0000364
• Description: Drosophila melanogaster dme-miR-289-5p mature miRNA
• Sequence: 16 - UAAAUAUUUAAGUGGAGCCUGCGACU - 41
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 12844358
   Computational identification of Drosophila microRNA genes
   "Lai EC, Tomancak P, Williams RW, Rubin GM"
   "Genome Biol (2003) 4:R42