Stem-loop mmu-mir-293

Accession

MI0000391

Symbol

MGI: Mir293

Description

Mus musculus mmu-mir-293 precursor miRNA mir-290

Gene
family

RF00665; mir-290

Literature search

10 open access papers mention mmu-mir-293
(46 sentences)

Sequence

138845 reads, 1170 reads per million, 62 experiments

uucaaucugugguACUCAAACUGUGUGACAUUUUGuucuuuguaagaAGUGCCGCAGAGUUUGUAGUGUugccgauugag
.((((((.((((((((((((((.((((.((((((...........)))))).)))).)))))).)))))))).)))))).

Structure

u      u        -      G    A      Guuc 
 ucaauc gugguACU CAAACU UGUG CAUUUU    u
 |||||| |||||||| |||||| |||| ||||||    u
 aguuag cguUGUGA GUUUGA ACGC GUGAag    u
g      c        U      G    C      aaug 

Annotation confidence High

Genome context

chr7: 3220343-3220422 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from mmu-mir-293

Mature mmu-miR-293-5p

• Accession: MIMAT0004573
• Description: Mus musculus mmu-miR-293-5p mature miRNA
• Sequence: 14 - ACUCAAACUGUGUGACAUUUUG - 35
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-293-3p

• Accession: MIMAT0000371
• Description: Mus musculus mmu-miR-293-3p mature miRNA
• Sequence: 48 - AGUGCCGCAGAGUUUGUAGUGU - 69
• Evidence: experimental ; cloned [1-2], Northern [1], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009