miRBase entry: mmu-mir-299a

Stem-loop mmu-mir-299a

Accession

MI0000399

Symbol

MGI: Mir299a

Description

Mus musculus mmu-mir-299a precursor miRNA mir-299

Gene
family?

RF00756; mir-299

Literature search

25 open access papers mention mmu-mir-299a
(94 sentences)

Sequence

28554 reads, 300 reads per million, 87 experiments

aagaaaUGGUUUACCGUCCCACAUACAUuuugaguaugUAUGUGGGACGGUAAACCGCUUcuu
(((((.((((((((((((((((((((((.......)))))))))))))))))))))).)))))

Structure

     a                      uu 
aagaa UGGUUUACCGUCCCACAUACAU  u
||||| ||||||||||||||||||||||  g
uucUU GCCAAAUGGCAGGGUGUAUgua  a
     C                      ug

Annotation confidence High

Do you think this miRNA is real?

Genome context

chr12: 109710638-109710700 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from mmu-mir-299a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mmu-miR-299a-5p

Accession	MIMAT0000377
Description	Mus musculus mmu-miR-299a-5p mature miRNA
Sequence	7 - UGGUUUACCGUCCCACAUACAU - 28
Evidence	experimental cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-299a-3p

Accession	MIMAT0004577
Description	Mus musculus mmu-miR-299a-3p mature miRNA
Sequence	39 - UAUGUGGGACGGUAAACCGCUU - 60
Evidence	experimental cloned [2], Illumina [3-4]
Database links
Predicted targets

References

PubMed ID: 17604727
A mammalian microRNA expression atlas based on small RNA library sequencing
"Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
"Cell (2007) 129:1401-1414

PubMed ID: 12919684
Embryonic stem cell-specific MicroRNAs
"Houbaviy HB, Murray MF, Sharp PA"
"Dev Cell (2003) 5:351-358

PubMed ID: 20215419
MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
"Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
"Mol Hum Reprod (2010) 16:463-471

PubMed ID: 20413612
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
"Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
"Genes Dev (2010) 24:992-1009