Accession
MI0000432
Description
Drosophila melanogaster
dme-mir-iab-4 precursor miRNA
Sequence
8734
reads,
450
reads per million, 45 experiments
ucguaaACGUAUACUGAAUGUAUCCUGAguguauccuaucCGGUAUACCUUCAGUAUACGUAACacga
((((..((((((((((((.((((((.((..(....)..)).)).)))).))))))))))))...))))
((((..((((((((((((.((((((.((..(....)..)).)).)))).))))))))))))...))))
Structure
-aa U - U gu u
ucgu ACGUAUACUGAA GUAU CC GA g a
|||| |||||||||||| |||| || || |
agca UGCAUAUGACUU CAUA GG cu c u
CAA C U C au c
Annotation confidence
High
Do you think this miRNA is real?
Comments
iab-4 is a transcript of the Bithorax complex which has been previously shown to contribute to proper formation of abdominal segments [2]. Reference [1] identified a miRNA gene within the transcript and mapped the ends of the mature miR sequence by cloning. Excised miR sequences were identified from both arms of the precursor and are named miR-iab-4-5p (5') and miR-iab-4-3p (3') as too few sequences were cloned to decide on which was predominantly expressed.
Genome context
chr3R: 16856275-16856342 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-iab-4
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-iab-4-5p
| Accession | MIMAT0000412 |
| Description | Drosophila melanogaster dme-miR-iab-4-5p mature miRNA |
| Sequence | 7 - ACGUAUACUGAAUGUAUCCUGA - 28 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-iab-4-3p
| Accession | MIMAT0000413 |
| Description | Drosophila melanogaster dme-miR-iab-4-3p mature miRNA |
| Sequence | 41 - CGGUAUACCUUCAGUAUACGUAAC - 64 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
References
|
