Stem-loop cbr-let-7

Accession

MI0000491

Description

Caenorhabditis briggsae cbr-let-7 precursor miRNA

Literature search

18 open access papers mention cbr-let-7
(117 sentences)

Sequence

3441 reads, 476.0 reads per million, 3 experiments

acugggguacggUGAGGUAGUAGGUUGUAUAGUUuagaauauuacucucggugaacuaugcaaguuucuaccucaccgaauaccagg
.((((.((.(((((((((((.((.((((((((((((...............)))))))))))).)).))))))))))).)).)))).

Structure

a    g  a           U  G            gaauau 
 cugg gu cggUGAGGUAG AG UUGUAUAGUUua      u
 |||| || ||||||||||| || ||||||||||||      a
 gacc ua gccacuccauc uu aacguaucaagu      c
g    a  a           u  g            ggcucu 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 18534121-18534207 [+]

Mature cbr-let-7-5p

• Accession: MIMAT0000463
• Description: Caenorhabditis briggsae cbr-let-7-5p mature miRNA
• Sequence: 13 - UGAGGUAGUAGGUUGUAUAGUU - 34
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864