Stem-loop cbr-mir-42

Accession

MI0000495

Description

Caenorhabditis briggsae cbr-mir-42 precursor miRNA

Sequence

uaacccuugucggaccuuuguggguguucgccuuuucggugaaguuacugaaugcuucuuCACCGGGUUAACAUCUACAGagguccuaaaggguuc
.(((((((...(((((((((((((((((.(((....((((((((...(.....)...))))))))))).)))))))))))))))))..))))))).

Structure

u       guc                 c   uuuu        uua u 
 aacccuu   ggaccuuuguggguguu gcc    cggugaag   c g
 |||||||   ||||||||||||||||| |||    ||||||||   | a
 uugggaa   ccuggaGACAUCUACAA UGG    GCCACuuc   g a
c       -au                 U   ----        uuc u 

Annotation confidence Low

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 8891358-8891453 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbr-mir-42

Mature cbr-miR-42

• Accession: MIMAT0000467
• Description: Caenorhabditis briggsae cbr-miR-42 mature miRNA
• Sequence: 61 - CACCGGGUUAACAUCUACAG - 80
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862