Accession
MI0000495
Description
Caenorhabditis briggsae
cbr-mir-42 precursor miRNA
Sequence
22032
reads,
1974.0
reads per million, 3 experiments
uaacccuugucggaccuuUGUGGGUGUUCGCCUUUUCGGUGAAGuuacugaaugcuucuUCACCGGGUUAACAUCUACAGAgguccuaaaggguuc
.(((((((...(((((((((((((((((.(((....((((((((...(.....)...))))))))))).)))))))))))))))))..))))))).
.(((((((...(((((((((((((((((.(((....((((((((...(.....)...))))))))))).)))))))))))))))))..))))))).
Structure
u guc C UUUU uua u aacccuu ggaccuuUGUGGGUGUU GCC CGGUGAAG c g ||||||| ||||||||||||||||| ||| |||||||| | a uugggaa ccuggAGACAUCUACAA UGG GCCACUuc g a c -au U ---- uuc u
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.
Genome context
chrII: 8891358-8891453 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cbr-mir-42
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-42-5p
| Accession | MIMAT0053514 |
| Description | Caenorhabditis briggsae cbr-miR-42-5p mature miRNA |
| Sequence | 19 - UGUGGGUGUUCGCCUUUUCGGUGAAG - 44 |
| Evidence | not_experimental |
Mature cbr-miR-42-3p
| Accession | MIMAT0000467 |
| Description | Caenorhabditis briggsae cbr-miR-42-3p mature miRNA |
| Sequence | 60 - UCACCGGGUUAACAUCUACAGA - 81 |
| Evidence | not_experimental |
References
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