miRBase entry: cbr-mir-43

Stem-loop cbr-mir-43

Accession

MI0000496

Description

Caenorhabditis briggsae cbr-mir-43 precursor miRNA

Literature search

1 open access papers mention cbr-mir-43
(2 sentences)

Sequence

2509 reads, 209.0 reads per million, 3 experiments

aggcgauucugcccguGACAUCAAGAUGCUUGUGAUUAUGcgaaaauguugggacaUAUCACAGUUUACUUGCUGUCGCaggcggauuauugcua
.((((((((((((.((((((.(((((.(((.(((((.((((...........).))))))))))).).)))).)))))).))))))..)))))).

Structure

a      --      c      U    - U   U     U   - gaaa 
 ggcgau  ucugcc guGACA CAAG A GCU GUGAU AUG c    a
 ||||||  |||||| |||||| |||| | ||| ||||| ||| |    u
 ucguua  aggcgg CGCUGU GUUC U UGA CACUA Uac g    g
a      uu      a      C    A U   -     -   a gguu

Annotation confidence High

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Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 8891204-8891298 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbr-mir-43

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cbr-miR-43-5p

Accession	MIMAT0053515
Description	Caenorhabditis briggsae cbr-miR-43-5p mature miRNA
Sequence	17 - GACAUCAAGAUGCUUGUGAUUAUG - 40
Evidence	not_experimental

Mature cbr-miR-43-3p

Accession	MIMAT0000468
Description	Caenorhabditis briggsae cbr-miR-43-3p mature miRNA
Sequence	57 - UAUCACAGUUUACUUGCUGUCGC - 79
Evidence	not_experimental

References

PubMed ID: 11679671
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
"Lau NC, Lim LP, Weinstein EG, Bartel DP"
"Science (2001) 294:858-862