Stem-loop cbr-mir-44

Accession

MI0000497

Description

Caenorhabditis briggsae cbr-mir-44 precursor miRNA

Literature search

1 open access papers mention cbr-mir-44
(1 sentences)

Sequence

497354 reads, 47835.0 reads per million, 3 experiments

gagaagggccgauCUGGAUGUGCUCGUUAGUCAUAgacgaaucacacuugaaaggucauaUGACUAGAGACACAUUCAGCUuggccuggaucuca
((((.(((((((.(((((((((.((.((((((((((((...(((....)))...))).))))))))).))))))))))).)))))))...)))).

Structure

-    --a       u         C  G         -   gaa   c 
 gaga   gggccga CUGGAUGUG UC UUAGUCAUA gac   uca a
 ||||   ||||||| ||||||||| || ||||||||| |||   |||  
 cucu   uccgguU GACUUACAC AG GAUCAGUau cug   agu c
a    agg       C         -  A         a   gaa   u 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 8891054-8891148 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from cbr-mir-44

Mature cbr-miR-44-5p

• Accession: MIMAT0053516
• Description: Caenorhabditis briggsae cbr-miR-44-5p mature miRNA
• Sequence: 14 - CUGGAUGUGCUCGUUAGUCAUA - 35
• Evidence: not_experimental

Mature cbr-miR-44-3p

• Accession: MIMAT0000469
• Description: Caenorhabditis briggsae cbr-miR-44-3p mature miRNA
• Sequence: 61 - UGACUAGAGACACAUUCAGCU - 81
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862