Accession
MI0000498
Description
Caenorhabditis briggsae
cbr-mir-45-1 precursor miRNA
Sequence
497099
reads,
47812.0
reads per million, 3 experiments
agugccacgCUGGAUGUGCUCGUUAGUCAUAguaaccucaucaauucaggcuuaUGACUAGAGACACAUUCAGCUuggcgcc
.((((((.((((((((((.((.((((((((((...(((.........))).)))))))))).)))))))))))).)))))).
.((((((.((((((((((.((.((((((((((...(((.........))).)))))))))).)))))))))))).)))))).
Structure
a c C G uaa cau gugcca gCUGGAUGUG UC UUAGUCAUAg ccu c |||||| |||||||||| || |||||||||| ||| a cgcggu CGACUUACAC AG GAUCAGUauu gga a c U - A --c cuu
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.
Genome context
chrII: 8900352-8900433 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from cbr-mir-45-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cbr-miR-45-1-5p
| Accession | MIMAT0053517 |
| Description | Caenorhabditis briggsae cbr-miR-45-1-5p mature miRNA |
| Sequence | 10 - CUGGAUGUGCUCGUUAGUCAUA - 31 |
| Evidence | not_experimental |
Mature cbr-miR-45-3p
| Accession | MIMAT0000470 |
| Description | Caenorhabditis briggsae cbr-miR-45-3p mature miRNA |
| Sequence | 55 - UGACUAGAGACACAUUCAGCU - 75 |
| Evidence | not_experimental |
References
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