Stem-loop cbr-mir-45-2

Accession

MI0000499

Description

Caenorhabditis briggsae cbr-mir-45-2 precursor miRNA

Sequence

agugccacgcuggauguguucguuagucauaguaaccucaucaauucaggcuuaUGACUAGAGACACAUUCAGCUuggcgcc
.((((((.(((((((((((.(.((((((((((...(((.........))).)))))))))).)))))))))))).)))))).

Structure

a      c           u g          uaa   cau 
 gugcca gcuggaugugu c uuagucauag   ccu   c
 |||||| ||||||||||| | ||||||||||   |||   a
 cgcggu CGACUUACACA G GAUCAGUauu   gga   a
c      U           - A          --c   cuu 

Annotation confidence Low

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 8903145-8903226 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-45-2

Mature cbr-miR-45

• Accession: MIMAT0000470
• Description: Caenorhabditis briggsae cbr-miR-45 mature miRNA
• Sequence: 55 - UGACUAGAGACACAUUCAGCU - 75
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862