Accession
MI0000501
Description
Caenorhabditis briggsae
cbr-mir-47 precursor miRNA
Sequence
34078
reads,
3535.0
reads per million, 3 experiments
uagcugaggaagacugAAGGGAGCUUUCUUUUGACAGUucgauuucgaacucuuacUGUCAUGGAGGCGCUCUCUUCAggugaacucuggcuc
.(((((((.....((((((((((((((((..(((((((..((........))..))))))).))))).))))))))))).....))).)))).
.(((((((.....((((((((((((((((..(((((((..((........))..))))))).))))).))))))))))).....))).)))).
Structure
u - gaaga - UU uc uuu agcu gag cugAAGGGAGC UUUCU UGACAGU ga c |||| ||| ||||||||||| ||||| ||||||| || ucgg cuc gACUUCUCUCG GGAGG ACUGUca cu g c u aagug C -U uu caa
Annotation confidence
High
Do you think this miRNA is real?
Comments
This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.
Genome context
chrX: 19747134-19747226 [+]
Database links
Mature cbr-miR-47-5p
| Accession | MIMAT0053520 |
| Description | Caenorhabditis briggsae cbr-miR-47-5p mature miRNA |
| Sequence | 17 - AAGGGAGCUUUCUUUUGACAGU - 38 |
| Evidence | not_experimental |
Mature cbr-miR-47-3p
| Accession | MIMAT0000472 |
| Description | Caenorhabditis briggsae cbr-miR-47-3p mature miRNA |
| Sequence | 57 - UGUCAUGGAGGCGCUCUCUUCA - 78 |
| Evidence | not_experimental |
References
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