Stem-loop cbr-mir-47

Accession

MI0000501

Description

Caenorhabditis briggsae cbr-mir-47 precursor miRNA

Sequence

uagcugaggaagacugaagggagcuuucuuuugacaguucgauuucgaacucuuacUGUCAUGGAGGCGCUCUCUUCAggugaacucuggcuc
.(((((((.....((((((((((((((((..(((((((..((........))..))))))).))))).))))))))))).....))).)))).

Structure

u    -   gaaga           -     uu       uc  uuu 
 agcu gag     cugaagggagc uuucu  ugacagu  ga   c
 |||| |||     ||||||||||| |||||  |||||||  ||    
 ucgg cuc     gACUUCUCUCG GGAGG  ACUGUca  cu   g
c    u   aagug           C     -U       uu  caa 

Annotation confidence Not enough data

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 19747134-19747226 [+]

Mature cbr-miR-47

• Accession: MIMAT0000472
• Description: Caenorhabditis briggsae cbr-miR-47 mature miRNA
• Sequence: 57 - UGUCAUGGAGGCGCUCUCUUCA - 78
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862