Stem-loop cbr-mir-57

Accession

MI0000507

Description

Caenorhabditis briggsae cbr-mir-57 precursor miRNA

Literature search

1 open access papers mention cbr-mir-57
(1 sentences)

Sequence

538494 reads, 70758.0 reads per million, 3 experiments

gcucugaguucgucUACCCUGUAGAUCGAGCUGUGUGUucugaaguaucauacACGAGCUAGACUACUAGGUGAAcgauggaauggagca
(((((....((((.((((..((((.((.((((.(((((..(((....))).))))))))).))))))..)))).))))......))))).

Structure

-     --gagu    c    CU    A  G    G     uc   a 
 gcucu      ucgu UACC  GUAG UC AGCU UGUGU  uga g
 |||||      |||| ||||  |||| || |||| |||||  |||  
 cgagg      agcA GUGG  CAUC AG UCGA GCAca  acu u
a     uaaggu    A    AU    -  A    -     -u   a 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 6610134-6610223 [-]

Mature cbr-miR-57-5p

• Accession: MIMAT0000477
• Description: Caenorhabditis briggsae cbr-miR-57-5p mature miRNA
• Sequence: 15 - UACCCUGUAGAUCGAGCUGUGUGU - 38
• Evidence: not_experimental

Mature cbr-miR-57-3p

• Accession: MIMAT0053525
• Description: Caenorhabditis briggsae cbr-miR-57-3p mature miRNA
• Sequence: 54 - ACGAGCUAGACUACUAGGUGAA - 75
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862