Stem-loop cbr-mir-58a

Accession

MI0000508

Description

Caenorhabditis briggsae cbr-mir-58a precursor miRNA mir-58

Gene
family

RF00835; mir-58

Sequence

auccauugcccuacuauucgcaucucaucacuccaguauauauauauauauauaaggaUGAGAUCGUUCAGUACGGCAAUggaa
.(((((((((.((((...((.((((((((.((...(((((((....))))))).))))))))))))...)))).))))))))).

Structure

a         c    auu  c        a  cca       u 
 uccauugcc uacu   cg aucucauc cu   guauaua a
 ||||||||| ||||   || |||||||| ||   |||||||  
 aggUAACGG AUGA   GC UAGAGUag ga   uauauau u
a         C    CUU  -        -  --a       a 

Annotation confidence Low

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIV: 9605763-9605846 [-]

Mature cbr-miR-58a

• Accession: MIMAT0000478
• Description: Caenorhabditis briggsae cbr-miR-58a mature miRNA
• Sequence: 59 - UGAGAUCGUUCAGUACGGCAAU - 80
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862