Stem-loop cbr-mir-60

Accession

MI0000509

Description

Caenorhabditis briggsae cbr-mir-60 precursor miRNA mir-60

Gene
family

RF00849; mir-60

Literature search

1 open access papers mention cbr-mir-60
(1 sentences)

Sequence

16947 reads, 1696.0 reads per million, 3 experiments

uucuugAGCUGGAAAGGUGACAUAAAAUCauguccaagcacgcgaUAUUAUGCACAUUUUCUAGUCCAagac
.(((((.((((((((((((.(((((.(((.(((......))).))).)))))))).))))))))).))))).

Structure

u     A         -   A     A   a   cc 
 ucuug GCUGGAAAG GUG CAUAA AUC ugu  a
 ||||| ||||||||| ||| ||||| ||| |||   
 agaAC UGAUCUUUU CAC GUAUU Uag gca  a
c     C         A   -     A   c   cg 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1,2]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 9414183-9414254 [+]

Mature cbr-miR-60-5p

• Accession: MIMAT0053527
• Description: Caenorhabditis briggsae cbr-miR-60-5p mature miRNA
• Sequence: 7 - AGCUGGAAAGGUGACAUAAAAUC - 29
• Evidence: not_experimental

Mature cbr-miR-60-3p

• Accession: MIMAT0000479
• Description: Caenorhabditis briggsae cbr-miR-60-3p mature miRNA
• Sequence: 46 - UAUUAUGCACAUUUUCUAGUCCA - 68
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864