Stem-loop cbr-mir-71

Accession

MI0000511

Description

Caenorhabditis briggsae cbr-mir-71 precursor miRNA mir-71

Gene
family

RF00832; mir-71

Literature search

2 open access papers mention cbr-mir-71
(16 sentences)

Sequence

24571 reads, 3010.0 reads per million, 3 experiments

agcugaacgaUGAAAGACAUGGGUAGUGAGACGUcggagccucgucgUAUCACUAUUCUGUUUUUCGCCgaucaguc
.(((((.((.(((((((((.(((((((((.(((.(((....))).))).)))))))))))))))))).)).))))).

Structure

a     a  a         U         G   U   a 
 gcuga cg UGAAAGACA GGGUAGUGA ACG cgg g
 ||||| || ||||||||| ||||||||| ||| |||  
 ugacu gC GCUUUUUGU CUUAUCACU Ugc gcu c
c     a  C         -         A   u   c 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrI: 2725611-2725687 [-]

Mature cbr-miR-71-5p

• Accession: MIMAT0000481
• Description: Caenorhabditis briggsae cbr-miR-71-5p mature miRNA
• Sequence: 11 - UGAAAGACAUGGGUAGUGAGACGU - 34
• Evidence: not_experimental

Mature cbr-miR-71-3p

• Accession: MIMAT0053529
• Description: Caenorhabditis briggsae cbr-miR-71-3p mature miRNA
• Sequence: 48 - UAUCACUAUUCUGUUUUUCGCC - 69
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862