Stem-loop cbr-mir-75

Accession

MI0000514

Description

Caenorhabditis briggsae cbr-mir-75 precursor miRNA

Literature search

1 open access papers mention cbr-mir-75
(1 sentences)

Sequence

215 reads, 30.0 reads per million, 3 experiments

ugcgagaccgaauugCAGUCGGUUGCAAGCUUCAAUAcagacaaugguucuugauaUUAAAGCUACCAACCGCCUUCAaaucgugcaucgcg
.((((..((((.(((.((.((((((..(((((.(((((((((....)))..)).)))).)))))..)))))).)).))).))).)..)))).

Structure

u    ga -   a   C  U      CA     C    -  --   a 
 gcga  c cga uug AG CGGUUG  AGCUU AAUA ca  gac a
 ||||  | ||| ||| || ||||||  ||||| |||| ||  |||  
 cgcu  g gcu aAC UC GCCAAC  UCGAA UUau gu  uug u
g    ac u   a   U  C      CA     A    a  uc   g 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 4419739-4419830 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-75

Mature cbr-miR-75-5p

• Accession: MIMAT0053532
• Description: Caenorhabditis briggsae cbr-miR-75-5p mature miRNA
• Sequence: 16 - CAGUCGGUUGCAAGCUUCAAUA - 37
• Evidence: not_experimental

Mature cbr-miR-75-3p

• Accession: MIMAT0000484
• Description: Caenorhabditis briggsae cbr-miR-75-3p mature miRNA
• Sequence: 57 - UUAAAGCUACCAACCGCCUUCA - 78
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862