Stem-loop cbr-mir-77-1

Accession

MI0000515

Description

Caenorhabditis briggsae cbr-mir-77-1 precursor miRNA mir-77

Gene
family

RF00827; mir-77

Sequence

8529 reads, 1245.0 reads per million, 3 experiments

gagcugugaauuuggaUAGCUGUGCUCUGAGGAAAUAACaauagucacaccccaugucauUUCAUCAGGCCAUAGCUGUCCAaauuucucgguucg
((((((.(((((((((((((((((.(((((.(((((.(((..............))).))))).))))).)))))))))))))))))..)))))).

Structure

-      -u                 C     G     A   auaguc 
 gagcug  gaauuuggaUAGCUGUG UCUGA GAAAU ACa      a
 ||||||  ||||||||||||||||| ||||| ||||| |||       
 cuuggc  uuuaaACCUGUCGAUAC GGACU CUUua ugu      c
g      uc                 C     A     c   acccca 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae. The hairpin precursor sequence represented here matches two positions on FPC contig 2260 in the C. briggsae genome sequence.

Genome context

chrII: 14395434-14395529 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-77-1

Mature cbr-miR-77-5p

• Accession: MIMAT0053533
• Description: Caenorhabditis briggsae cbr-miR-77-5p mature miRNA
• Sequence: 17 - UAGCUGUGCUCUGAGGAAAUAAC - 39
• Evidence: not_experimental

Mature cbr-miR-77-3p

• Accession: MIMAT0000485
• Description: Caenorhabditis briggsae cbr-miR-77-3p mature miRNA
• Sequence: 61 - UUCAUCAGGCCAUAGCUGUCCA - 82
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862