Stem-loop cbr-mir-82

Accession

MI0000520

Description

Caenorhabditis briggsae cbr-mir-82 precursor miRNA

Literature search

1 open access papers mention cbr-mir-82
(1 sentences)

Sequence

578688 reads, 65255.0 reads per million, 3 experiments

aaguucuucuagcgacAGGUUUUCGCCGUGAUCUGCAGAguuccaugaagaaaacaucUGAGAUCAUCGUGAAAGCCAGUugcuuaagaggacuc
.(((((((..((((((.(((((((((.(((((((.(((((((..........))).))))))))))).))))))))).))))))...))))))).

Structure

a       -cu      A         C       G    -   ccau 
 aguucuu   agcgac GGUUUUCGC GUGAUCU CAGA guu    g
 |||||||   |||||| ||||||||| ||||||| |||| |||     
 ucaggag   ucguUG CCGAAAGUG UACUAGA GUcu caa    a
c       aau      A         C       -    a   aaga 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrX: 4356766-4356860 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-82

Mature cbr-miR-82-5p

• Accession: MIMAT0053537
• Description: Caenorhabditis briggsae cbr-miR-82-5p mature miRNA
• Sequence: 17 - AGGUUUUCGCCGUGAUCUGCAGA - 39
• Evidence: not_experimental

Mature cbr-miR-82-3p

• Accession: MIMAT0000489
• Description: Caenorhabditis briggsae cbr-miR-82-3p mature miRNA
• Sequence: 59 - UGAGAUCAUCGUGAAAGCCAGU - 80
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862