Stem-loop cbr-mir-86

Accession

MI0000522

Description

Caenorhabditis briggsae cbr-mir-86 precursor miRNA

Literature search

2 open access papers mention cbr-mir-86
(3 sentences)

Sequence

25687 reads, 2706.0 reads per million, 3 experiments

cgagucaaugccguuUAAGUGAAUGCUUUGCCACAGUCuucgaucaugucacaugaagcCUGGGCUUAGAUUCACUUAGGCcggcguuccuugacuca
.(((((((((((((((((((((((.((..(((.(((.((((.............)))).))))))..))))))))))))).))))))....)))))).

Structure

c      ----      -           G  UU   A   U    gauca 
 gaguca    augccg uuUAAGUGAAU CU  GCC CAG Cuuc     u
 ||||||    |||||| ||||||||||| ||  ||| ||| ||||     g
 cucagu    ugcggc GGAUUCACUUA GA  CGG GUC gaag     u
a      uccu      C           -  UU   -   c    uacac 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIII: 6376870-6376967 [-]

Mature cbr-miR-86-5p

• Accession: MIMAT0000491
• Description: Caenorhabditis briggsae cbr-miR-86-5p mature miRNA
• Sequence: 16 - UAAGUGAAUGCUUUGCCACAGUC - 38
• Evidence: not_experimental

Mature cbr-miR-86-3p

• Accession: MIMAT0053538
• Description: Caenorhabditis briggsae cbr-miR-86-3p mature miRNA
• Sequence: 60 - CUGGGCUUAGAUUCACUUAGGC - 81
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862