Stem-loop cbr-mir-90a

Accession

MI0000524

Description

Caenorhabditis briggsae cbr-mir-90a precursor miRNA

Sequence

140852 reads, 18857.0 reads per million, 3 experiments

cgcacucauuucaagcGGCUUUCAACGACUAUAUCAACcaaaucaagcuagauacguUGAUAUGUUGUUUGAAUGCCCCuugagauuuuggaguguu
.((((((((((((((.(((.(((((((((.((((((((...(((......)))..)))))))))))).))))).))).))))))))....)))))).

Structure

c      ----        c   U     -    U        caa   aa 
 gcacuc    auuucaag GGC UUCAA CGAC AUAUCAAC   auc  g
 ||||||    |||||||| ||| ||||| |||| ||||||||   |||   
 ugugag    uagaguuC CCG AAGUU GUUG UAUAGUug   uag  c
u      guuu        C   U     U    -        -ca   au 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIII: 14455353-14455449 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-90a

Mature cbr-miR-90a-5p

• Accession: MIMAT0053540
• Description: Caenorhabditis briggsae cbr-miR-90a-5p mature miRNA
• Sequence: 17 - GGCUUUCAACGACUAUAUCAAC - 38
• Evidence: not_experimental

Mature cbr-miR-90a-3p

• Accession: MIMAT0000493
• Description: Caenorhabditis briggsae cbr-miR-90a-3p mature miRNA
• Sequence: 58 - UGAUAUGUUGUUUGAAUGCCCC - 79
• Evidence: not_experimental

References