Stem-loop cbr-mir-124a

Accession

MI0000525

Description

Caenorhabditis briggsae cbr-mir-124a precursor miRNA

Literature search

2 open access papers mention cbr-mir-124a
(21 sentences)

Sequence

213 reads, 21.0 reads per million, 3 experiments

uuuccagucgucauaugGCGUCCACCUGAGUGACUUUAGUggacauguauaguuuccaacUAAGGCACGCGGUGAAUGCCAcguggcaauucugggau
.((((((..(((((.((((((.((((.(.(((.((((((((((.((.....)).))).)))))))))).))))).)))))).)))))....)))))).

Structure

u      --uc     a      C    U A   A       -   c  g 
 uuccag    gucau ugGCGU CACC G GUG CUUUAGU gga au u
 ||||||    ||||| |||||| |||| | ||| ||||||| ||| || a
 aggguc    cggug ACCGUA GUGG C CAC GGAAUca ccu ug u
u      uuaa     c      A    - G   -       a   u  a 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIV: 8910157-8910254 [+]

Mature cbr-miR-124a-5p

• Accession: MIMAT0053541
• Description: Caenorhabditis briggsae cbr-miR-124a-5p mature miRNA
• Sequence: 18 - GCGUCCACCUGAGUGACUUUAGU - 40
• Evidence: not_experimental

Mature cbr-miR-124a-3p

• Accession: MIMAT0000494
• Description: Caenorhabditis briggsae cbr-miR-124a-3p mature miRNA
• Sequence: 61 - UAAGGCACGCGGUGAAUGCCA - 81
• Evidence: not_experimental

References