Stem-loop cbr-mir-228

Accession

MI0000526

Description

Caenorhabditis briggsae cbr-mir-228 precursor miRNA

Literature search

3 open access papers mention cbr-mir-228
(5 sentences)

Sequence

330881 reads, 44076.0 reads per million, 3 experiments

aucccacccuguucgcAAUGGCACUGCAUGAAUUCACGGaugcaaagcgacagaccGCGGAUCAUGCGGUACCAUAGCugacgguggugagau
(((.(((((((((.((.((((.(((((((((.(((.(((.((........))..))).)))))))))))).)))).)).))))).)))).)))

Structure

   c    -     c  A    C         A   A   -a  caa 
auc cacc cuguu gc AUGG ACUGCAUGA UUC CGG  ug   a
||| |||| ||||| || |||| ||||||||| ||| |||  ||    
uag gugg ggcag CG UACC UGGCGUACU AGG Gcc  ac   g
   a    u     u  A    A         -   C   ag  agc 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrIV: 6041090-6041182 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cbr-mir-228

Mature cbr-miR-228-5p

• Accession: MIMAT0000495
• Description: Caenorhabditis briggsae cbr-miR-228-5p mature miRNA
• Sequence: 17 - AAUGGCACUGCAUGAAUUCACGG - 39
• Evidence: not_experimental

Mature cbr-miR-228-3p

• Accession: MIMAT0053542
• Description: Caenorhabditis briggsae cbr-miR-228-3p mature miRNA
• Sequence: 57 - GCGGAUCAUGCGGUACCAUAGC - 78
• Evidence: not_experimental

References