Stem-loop cbr-mir-236

Accession

MI0000532

Description

Caenorhabditis briggsae cbr-mir-236 precursor miRNA mir-236

Gene
family

RF04250; mir-236

Literature search

1 open access papers mention cbr-mir-236
(1 sentences)

Sequence

9543 reads, 1122.0 reads per million, 3 experiments

aagugaccaauguccagcGUCUUACCUGUUCAAUAUUUAGAcugaccaaacccauagcucUAAUACUGUCAGGUAAUGACGCUggauagucuugucauug
.((((((...((((((((((((((((((..((.((((.((((((..........))).))))))).)).))))))).))))))))))).....)))))).

Structure

a      --caa           -       UU  A    U   -   acca 
 agugac     uguccagcGUC UUACCUG  CA UAUU AGA cug    a
 ||||||     ||||||||||| |||||||  || |||| ||| |||     
 uuacug     auaggUCGCAG AAUGGAC  GU AUAA Ucu gau    a
g      uucug           U       -U  C    -   c   accc 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrII: 5682794-5682893 [-]

Mature cbr-miR-236-5p

• Accession: MIMAT0053545
• Description: Caenorhabditis briggsae cbr-miR-236-5p mature miRNA
• Sequence: 19 - GUCUUACCUGUUCAAUAUUUAGA - 41
• Evidence: not_experimental

Mature cbr-miR-236-3p

• Accession: MIMAT0000500
• Description: Caenorhabditis briggsae cbr-miR-236-3p mature miRNA
• Sequence: 61 - UAAUACUGUCAGGUAAUGACGCU - 83
• Evidence: not_experimental

References