Stem-loop cbr-mir-241

Accession

MI0000533

Description

Caenorhabditis briggsae cbr-mir-241 precursor miRNA

Literature search

4 open access papers mention cbr-mir-241
(12 sentences)

Sequence

4768 reads, 697.0 reads per million, 3 experiments

acggugucaaagcUGAGGUAGGUGUGAGAAAUGAcgaaaggcucuuaaucguuucAUUGUCUCGCAGCUGCUUCAACUGugauuuaccga
.((((((((.((.((((((((.((((((((((((((((((...)))..)))..))))).))))))).)))))))).)).))))..)))).

Structure

a    --    a  c        G       -     --   --   g 
 cggu  guca ag UGAGGUAG UGUGAGA AAUGA  cga  aag  
 ||||  |||| || |||||||| ||||||| |||||  |||  ||| c
 gcca  uagu UC ACUUCGUC ACGCUCU UUAcu  gcu  uuc  
a    uu    G  A        G       G     uu   aa   u 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrV: 14730276-14730365 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cbr-mir-241

Mature cbr-miR-241-5p

• Accession: MIMAT0000501
• Description: Caenorhabditis briggsae cbr-miR-241-5p mature miRNA
• Sequence: 14 - UGAGGUAGGUGUGAGAAAUGA - 34
• Evidence: not_experimental

Mature cbr-miR-241-3p

• Accession: MIMAT0053546
• Description: Caenorhabditis briggsae cbr-miR-241-3p mature miRNA
• Sequence: 56 - AUUGUCUCGCAGCUGCUUCAACUG - 79
• Evidence: not_experimental

References