Stem-loop cbr-mir-244

Accession

MI0000534

Description

Caenorhabditis briggsae cbr-mir-244 precursor miRNA

Literature search

1 open access papers mention cbr-mir-244
(1 sentences)

Sequence

17162 reads, 1628.0 reads per million, 3 experiments

acccaaauuucucgauuUCUUUGGUUGUACAAAGUGGUAUGgcucucuugcucaUACCGCUUUACAGCUAAAGGAAucgauugauuuugga
..(((((.((.((((((((((((((((((..((((((((((((......)).))))))))))))))))))))))))))))..)).))))).

Structure

ac     u  -c                  CA          -  uc 
  ccaaa uu  ucgauuUCUUUGGUUGUA  AAGUGGUAUG gc  u
  ||||| ||  ||||||||||||||||||  |||||||||| ||   
  gguuu ag  agcuAAGGAAAUCGACAU  UUCGCCAUac cg  c
-a     u  uu                  --          u  uu 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrI: 3161571-3161661 [+]

Mature cbr-miR-244-5p

• Accession: MIMAT0000502
• Description: Caenorhabditis briggsae cbr-miR-244-5p mature miRNA
• Sequence: 18 - UCUUUGGUUGUACAAAGUGGUAUG - 41
• Evidence: not_experimental

Mature cbr-miR-244-3p

• Accession: MIMAT0053547
• Description: Caenorhabditis briggsae cbr-miR-244-3p mature miRNA
• Sequence: 55 - UACCGCUUUACAGCUAAAGGAA - 76
• Evidence: not_experimental

References