Stem-loop cbr-mir-259

Accession

MI0000540

Description

Caenorhabditis briggsae cbr-mir-259 precursor miRNA

Sequence

188 reads, 19.0 reads per million, 3 experiments

agucaucgaaacgaguAAAUCUCAUCCUAAUCUGGUUgcauuuucaauacuuuuugCUACCGAUUUGGUUUGGGAUUGGCuugucuaguauugac
.((((.(...((((((.(((((((.((.((((.(((.(((..............))).))))))).))..))))))).))))))...)...))))

Structure

a    --u gaa      A       -U  U    U   U   uuuuca 
 guca   c   acgagu AAUCUCA  CC AAUC GGU gca      a
 ||||   |   |||||| |||||||  || |||| ||| |||       
 cagu   g   uguuCG UUAGGGU  GG UUAG CCA Cgu      u
-    uau auc      G       UU  U    -   U   uuuuca 

Annotation confidence High

Comments

This miRNA sequence is predicted based on homology to a verified miRNA from C. elegans [1]. The expression of this miRNA has not been verified in C. briggsae.

Genome context

chrV: 10501563-10501657 [+]

Mature cbr-miR-259-5p

• Accession: MIMAT0000508
• Description: Caenorhabditis briggsae cbr-miR-259-5p mature miRNA
• Sequence: 17 - AAAUCUCAUCCUAAUCUGGUU - 37
• Evidence: not_experimental

Mature cbr-miR-259-3p

• Accession: MIMAT0053549
• Description: Caenorhabditis briggsae cbr-miR-259-3p mature miRNA
• Sequence: 57 - CUACCGAUUUGGUUUGGGAUUGGC - 80
• Evidence: not_experimental

References