Stem-loop mmu-mir-148a

Accession

MI0000550

Symbol

MGI: Mir148a

Description

Mus musculus mmu-mir-148a precursor miRNA mir-148

Gene
family

RF00248; mir-148

Literature search

96 open access papers mention mmu-mir-148a
(852 sentences)

Sequence

1751234 reads, 3086 reads per million, 107 experiments

agccaguuuggucuuuugagacAAAGUUCUGAGACACUCCGACUcugaguaugauagaagUCAGUGCACUACAGAACUUUGUcucuagaggcugugguc
.((((...((((((((.((((((((((((((((.((((..(((((((.......))).))))))))..)).)))))))))))))).)))))))))))).

Structure

a    guu        u              -  -A    CC    -   ag 
 gcca   uggucuuu gagacAAAGUUCUG AG  CACU  GACU cug  u
 ||||   |||||||| |||||||||||||| ||  ||||  |||| |||  a
 uggu   gucggaga cucUGUUUCAAGAC UC  GUGA  CUga gau  u
c    ---        u              A  AC    --    a   ag 

Annotation confidence High

Comments

This sequence was previsouly named mir-148 here and in [1], but is renamed to avoid confusion with mir-148b (MIR:MI0000617). This sequence maps to mouse chromosome 6.

Genome context

chr6: 51269812-51269910 [-]

Mature mmu-miR-148a-5p

• Accession: MIMAT0004617
• Description: Mus musculus mmu-miR-148a-5p mature miRNA
• Sequence: 23 - AAAGUUCUGAGACACUCCGACU - 44
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-148a-3p

• Accession: MIMAT0000516
• Description: Mus musculus mmu-miR-148a-3p mature miRNA
• Sequence: 61 - UCAGUGCACUACAGAACUUUGU - 82
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009