Stem-loop rno-mir-328a

Accession

MI0000602

Description

Rattus norvegicus rno-mir-328a precursor miRNA

Literature search

18 open access papers mention rno-mir-328a
(257 sentences)

Sequence

164198 reads, 143 reads per million, 495 experiments

uggggcaGGGGGGCAGGAGGGGCUCAgggagaaagcaucuacagcccCUGGCCCUCUCUGCCCUUCCGUccccuguccccaaau
(((((((((((((((((.(((((.(((((.....((.......)))))))))))).)))))).......)))))).)))))...

Structure

---     -      -------      A     U     agaaa  au 
   ugggg caGGGG       GGCAGG GGGGC CAggg     gc  c
   ||||| ||||||       |||||| ||||| |||||     ||  u
   acccc gucccc       CCGUCU UCCCG GUCcc     cg  a
uaa     u      UGCCUUC      C     -     -----  ac 

Annotation confidence High

Genome context

chr19: 37263199-37263282 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-328a

Mature rno-miR-328a-5p

• Accession: MIMAT0017029
• Description: Rattus norvegicus rno-miR-328a-5p mature miRNA
• Sequence: 8 - GGGGGGCAGGAGGGGCUCA - 26
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-328a-3p

• Accession: MIMAT0000564
• Description: Rattus norvegicus rno-miR-328a-3p mature miRNA
• Sequence: 48 - CUGGCCCUCUCUGCCCUUCCGU - 69
• Evidence: experimental ; cloned [1-2], Northern [1], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249