Stem-loop mmu-mir-330

Accession

MI0000607

Symbol

MGI: Mir330

Description

Mus musculus mmu-mir-330 precursor miRNA mir-330

Gene
family

RF00770; mir-330

Literature search

17 open access papers mention mmu-mir-330
(251 sentences)

Sequence

67027 reads, 124 reads per million, 104 experiments

gacccuuuggcgaucucugccUCUCUGGGCCUGUGUCUUAGGCucuucaagauccaacgaGCAAAGCACAGGGCCUGCAGAGAgguagcgcucugcuc
........(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).))).

Structure

gacccuuu   -  u u           --    -    U   AG    uucaa 
        ggc ga c cugccUCUCUG  GGCC UGUG CUU  GCuc     g
        ||| || | |||||||||||  |||| |||| |||  ||||     a
        ucg cu g gauggAGAGAC  CCGG ACAC GAA  CGag     u
-------c   u  c c           GU    G    -   -A    caacc 

Annotation confidence High

Genome context

chr7: 19181465-19181562 [+]

Mature mmu-miR-330-5p

• Accession: MIMAT0004642
• Description: Mus musculus mmu-miR-330-5p mature miRNA
• Sequence: 22 - UCUCUGGGCCUGUGUCUUAGGC - 43
• Evidence: experimental ; cloned [1-2], Illumina [2-3]

Mature mmu-miR-330-3p

• Accession: MIMAT0000569
• Description: Mus musculus mmu-miR-330-3p mature miRNA
• Sequence: 61 - GCAAAGCACAGGGCCUGCAGAGA - 83
• Evidence: experimental ; cloned [1-2], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009