Stem-loop rno-mir-335

Accession

MI0000612

Description

Rattus norvegicus rno-mir-335 precursor miRNA

Literature search

15 open access papers mention rno-mir-335
(140 sentences)

Sequence

130247 reads, 107 reads per million, 476 experiments

ucuuuugggcgggggUCAAGAGCAAUAACGAAAAAUGUuuguuuuucguaaaccguuuuucauuauugcuccugaccuccucucauuuguuauagcca
.....((((.((((((((.(((((((((.((((((((...((((.....)))))))))))).))))))))).)))))))).)))).............

Structure

--------ucuuu    c        A         C        Uuu    u 
             uggg gggggUCA GAGCAAUAA GAAAAAUG   guuu u
             |||| |||||||| ||||||||| ||||||||   |||| c
             acuc ccuccagu cucguuauu cuuuuugc   caaa g
accgauauuguuu    u        c         a        ---    u 

Annotation confidence Medium

Genome context

Unknown

Mature rno-miR-335

• Accession: MIMAT0000575
• Description: Rattus norvegicus rno-miR-335 mature miRNA
• Sequence: 16 - UCAAGAGCAAUAACGAAAAAUGU - 38
• Evidence: experimental ; cloned [1-2], Northern [1]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365