Stem-loop rno-mir-337

Accession

MI0000614

Description

Rattus norvegicus rno-mir-337 precursor miRNA

Literature search

5 open access papers mention rno-mir-337
(5 sentences)

Sequence

39513 reads, 85 reads per million, 353 experiments

aguguagugagaaguuggggggugggaaCGGCGUCAUGCAGGAGUUGAUugcacagccaUUCAGCUCCUAUAUGAUGCCUUUcuucacccccuucaa
................((((((((((((.(((((((((.(((((((((.((......)).))))))))).))))))))).))).)))))))))....

Structure

aguguagugagaaguu         -   C         C         U  ca 
                ggggggugg gaa GGCGUCAUG AGGAGUUGA ug  c
                ||||||||| ||| ||||||||| ||||||||| ||   
                ucccccacu cUU CCGUAGUAU UCCUCGACU ac  a
------------aacu         u   U         A         U  cg 

Annotation confidence High

Genome context

chr6: 133705920-133706016 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from rno-mir-337

Mature rno-miR-337-5p

• Accession: MIMAT0017035
• Description: Rattus norvegicus rno-miR-337-5p mature miRNA
• Sequence: 29 - CGGCGUCAUGCAGGAGUUGAU - 49
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-337-3p

• Accession: MIMAT0000577
• Description: Rattus norvegicus rno-miR-337-3p mature miRNA
• Sequence: 60 - UUCAGCUCCUAUAUGAUGCCUUU - 82
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249