Stem-loop rno-mir-148b

Accession

MI0000616

Description

Rattus norvegicus rno-mir-148b precursor miRNA

Literature search

19 open access papers mention rno-mir-148b
(112 sentences)

Sequence

97146 reads, 102 reads per million, 497 experiments

caggcacucuuagcauuugagguGAAGUUCUGUUAUACACUCAGGcuguggcucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucua
...........(((.((((((((((((((((((.((.(((((((((....)).))))......))).)).)))))))))))))))))).))).....

Structure

caggcacucuu   a                  U  A   ------    -  u 
           agc uuugagguGAAGUUCUGU AU CAC      UCAG Gc g
           ||| |||||||||||||||||| || |||      |||| ||  
           ucg aagcucUGUUUCAAGACA UA GUG      aguc cg u
------aucuu   a                  C  C   ACUgaa    u  g 

Annotation confidence Medium

Genome context

chr7: 144912038-144912134 [+]

Mature rno-miR-148b-5p

• Accession: MIMAT0004645
• Description: Rattus norvegicus rno-miR-148b-5p mature miRNA
• Sequence: 24 - GAAGUUCUGUUAUACACUCAGG - 45
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-148b-3p

• Accession: MIMAT0000579
• Description: Rattus norvegicus rno-miR-148b-3p mature miRNA
• Sequence: 61 - UCAGUGCAUCACAGAACUUUGU - 82
• Evidence: experimental ; cloned [1], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249