Stem-loop mmu-mir-148b

Accession

MI0000617

Symbol

MGI: Mir148b

Description

Mus musculus mmu-mir-148b precursor miRNA mir-148

Gene
family

RF00248; mir-148

Literature search

46 open access papers mention mmu-mir-148b
(334 sentences)

Sequence

100741 reads, 428 reads per million, 107 experiments

caggcacccuuagcauuugagguGAAGUUCUGUUAUACACUCAGGCUguggcucugaaagUCAGUGCAUCACAGAACUUUGUcucgaaagcuuucua
.(((...))).(((.((((((((((((((((((.((.(((((((((....)).))))......))).)).)))))))))))))))))).))).....

Structure

caggcacccuu   a                  U  A   ------    -  U 
           agc uuugagguGAAGUUCUGU AU CAC      UCAG GC g
           ||| |||||||||||||||||| || |||      |||| ||  
           ucg aagcucUGUUUCAAGACA UA GUG      aguc cg u
------aucuu   a                  C  C   ACUgaa    u  g 

Annotation confidence Medium

Genome context

chr15: 103285125-103285221 [+]

Mature mmu-miR-148b-5p

• Accession: MIMAT0017036
• Description: Mus musculus mmu-miR-148b-5p mature miRNA
• Sequence: 24 - GAAGUUCUGUUAUACACUCAGGCU - 47
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-148b-3p

• Accession: MIMAT0000580
• Description: Mus musculus mmu-miR-148b-3p mature miRNA
• Sequence: 61 - UCAGUGCAUCACAGAACUUUGU - 82
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009