Stem-loop mmu-mir-338

Accession

MI0000619

Symbol

MGI: Mir338

Description

Mus musculus mmu-mir-338 precursor miRNA mir-338

Gene
family

RF00686; mir-338

Literature search

33 open access papers mention mmu-mir-338
(271 sentences)

Sequence

75245 reads, 193 reads per million, 76 experiments

caacgcugcacaggccguccuccccAACAAUAUCCUGGUGCUGAGUGggugcacagugacUCCAGCAUCAGUGAUUUUGUUGaagagggcagcugcca
.......(((...((.((((((..((((((.(((((((((((((((.(........).))).))))))))).))).))))))..)))))).)))))..

Structure

caacgcu   cag  c      cc      U   -         -   G gug 
       gca   gc guccuc  cAACAA AUC CUGGUGCUG AGU g   c
       |||   || ||||||  |||||| ||| ||||||||| ||| |    
       cgu   cg cgggag  GUUGUU UAG GACUACGAC Uca u   a
-----ac   ---  a      aa      U   U         C   g gac 

Annotation confidence Medium

Genome context

chr11: 120014765-120014862 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-338

Mature mmu-miR-338-5p

• Accession: MIMAT0004647
• Description: Mus musculus mmu-miR-338-5p mature miRNA
• Sequence: 26 - AACAAUAUCCUGGUGCUGAGUG - 47
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-338-3p

• Accession: MIMAT0000582
• Description: Mus musculus mmu-miR-338-3p mature miRNA
• Sequence: 61 - UCCAGCAUCAGUGAUUUUGUUG - 82
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009