Accession
MI0000620
Description
Rattus norvegicus
rno-mir-339 precursor miRNA
Literature search
5 open access papers mention rno-mir-339
(48 sentences)
(48 sentences)
Sequence
64936
reads,
77
reads per million, 493 experiments
acgggguggacaccgUCCCUGUCCUCCAGGAGCUCACGuaugccugccugUGAGCGCCUCGACGACAGAGCCAgaguccaccccugcacugcccaa
..(((((((((.(.(.(.(((((.((.(((.(((((((((....)))..)))))).))).)).))))).).).).)))))))))............
..(((((((((.(.(.(.(((((.((.(((.(((((((((....)))..)))))).))).)).))))).).).).)))))))))............
Structure
----------ac a c U C C C A -- u
gggguggac c g C CUGUC UC AGG GCUCAC Gua g
||||||||| | | | ||||| || ||| |||||| |||
ccccaccug g C G GACAG AG UCC CGAGUg cgu c
aacccgucacgu a A C A C C G uc c
Annotation confidence
High
Do you think this miRNA is real?
Comments
Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. The miR-339-5p sequence reported in [1] contains two 3' terminal U residues, which conflict with the precursor sequence shown here. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
chr12: 17369002-17369097 [+]
Database links
Mature rno-miR-339-5p
| Accession | MIMAT0000583 |
| Description | Rattus norvegicus rno-miR-339-5p mature miRNA |
| Sequence | 16 - UCCCUGUCCUCCAGGAGCUCACG - 38 |
| Evidence |
experimental
cloned [1-2], SOLiD [3] |
Mature rno-miR-339-3p
| Accession | MIMAT0004648 |
| Description | Rattus norvegicus rno-miR-339-3p mature miRNA |
| Sequence | 51 - UGAGCGCCUCGACGACAGAGCCA - 73 |
| Evidence |
experimental
cloned [2], SOLiD [3] |
References
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