Stem-loop mmu-mir-339

Accession

MI0000621

Symbol

MGI: Mir339

Description

Mus musculus mmu-mir-339 precursor miRNA mir-339

Gene
family

RF00763; mir-339

Literature search

23 open access papers mention mmu-mir-339
(70 sentences)

Sequence

19402 reads, 118 reads per million, 107 experiments

acgggguggccacuaUCCCUGUCCUCCAGGAGCUCACGuaugccugccugUGAGCGCCUCGGCGACAGAGCCGguguccaccccugcacuguccac
..(((((((.((((..(.(((((..(((((.(((((((((....)))..)))))).))).)).))))).)..)))).)))))))............

Structure

----------ac       c    aU C     CU  -   A      --   u 
            ggggugg cacu  C CUGUC  CC AGG GCUCAC  Gua g
            ||||||| ||||  | |||||  || ||| ||||||  |||  
            ccccacc gugG  G GACAG  GG UCC CGAGUg  cgu c
caccugucacgu       u    CC A     -C  C   G      uc   c 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [1].

Genome context

chr5: 139369650-139369745 [-]

Mature mmu-miR-339-5p

• Accession: MIMAT0000584
• Description: Mus musculus mmu-miR-339-5p mature miRNA
• Sequence: 16 - UCCCUGUCCUCCAGGAGCUCACG - 38
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature mmu-miR-339-3p

• Accession: MIMAT0004649
• Description: Mus musculus mmu-miR-339-3p mature miRNA
• Sequence: 51 - UGAGCGCCUCGGCGACAGAGCCG - 73
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009