Stem-loop rno-mir-345

Accession

MI0000631

Description

Rattus norvegicus rno-mir-345 precursor miRNA

Literature search

6 open access papers mention rno-mir-345
(24 sentences)

Sequence

26765 reads, 27 reads per million, 488 experiments

acccaaguccaggccUGCUGACCCCUAGUCCAGUGCuugugguggcuacugggCCCUGAACUAGGGGUCUGGAGAccuggguuugaucuccacagg
...((((((((((.((.(.((((((((((.(((.((((((((...)))).)))).))).)))))))))).).)).))))))))))...........

Structure

--------acc          c  G U          C   U    -    u 
           caaguccagg cU C GACCCCUAGU CAG GCuu gugg  
           |||||||||| || | |||||||||| ||| |||| |||| g
           guuugggucc GA G CUGGGGAUCA GUC Cggg cauc  
ggacaccucua          A  G U          A   C    u    g 

Annotation confidence High

Genome context

chr6: 132748968-132749063 [+]

Mature rno-miR-345-5p

• Accession: MIMAT0000594
• Description: Rattus norvegicus rno-miR-345-5p mature miRNA
• Sequence: 16 - UGCUGACCCCUAGUCCAGUGC - 36
• Evidence: experimental ; cloned [1-3], Northern [1], SOLiD [5]

Mature rno-miR-345-3p

• Accession: MIMAT0004655
• Description: Rattus norvegicus rno-miR-345-3p mature miRNA
• Sequence: 54 - CCCUGAACUAGGGGUCUGGAGA - 75
• Evidence: experimental ; cloned [4], SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


5. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68