Stem-loop rno-mir-20a

Accession

MI0000638

Description

Rattus norvegicus rno-mir-20a precursor miRNA

Literature search

49 open access papers mention rno-mir-20a
(170 sentences)

Sequence

55828 reads, 58 reads per million, 489 experiments

cagcuucuguagcacUAAAGUGCUUAUAGUGCAGGUAGugugucgucaucuACUGCAUUACGAGCACUUACAguacugccagcug
(((((...((((.(((.((((((((.((((((((.(((.(((....)))))))))))))).))))))))..))).)))).)))))

Structure

     ucu    c   -A        A        G   u   u 
cagcu   guag acU  AAGUGCUU UAGUGCAG UAG gug c
|||||   |||| |||  |||||||| |||||||| ||| |||  
gucga   cguc ugA  UUCACGAG AUUACGUC Auc uac g
     --c    a   CA        C        -   -   u 

Annotation confidence High

Genome context

chr15: 100180334-100180418 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-20a

Mature rno-miR-20a-5p

• Accession: MIMAT0000602
• Description: Rattus norvegicus rno-miR-20a-5p mature miRNA
• Sequence: 16 - UAAAGUGCUUAUAGUGCAGGUAG - 38
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-20a-3p

• Accession: MIMAT0000603
• Description: Rattus norvegicus rno-miR-20a-3p mature miRNA
• Sequence: 52 - ACUGCAUUACGAGCACUUACA - 72
• Evidence: experimental ; cloned [1], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


4. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249