Stem-loop mmu-mir-139

Accession

MI0000693

Symbol

MGI: Mir139

Description

Mus musculus mmu-mir-139 precursor miRNA mir-139

Gene
family

RF00703; mir-139

Literature search

44 open access papers mention mmu-mir-139
(498 sentences)

Sequence

104277 reads, 284 reads per million, 100 experiments

guguauUCUACAGUGCACGUGUCUCCAGuguggcucggaggcUGGAGACGCGGCCCUGUUGGAGuaac
...((((((((((.((.((((((((((((.(.......).)))))))))))))).))).)))))))..

Structure

gug       -   U  A            g gg 
   uauUCUA CAG GC CGUGUCUCCAGu u  c
   ||||||| ||| || |||||||||||| |  u
   auGAGGU GUC CG GCGCAGAGGUcg a  c
-ca       U   C  -            g gg 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2].

Genome context

chr7: 101475376-101475443 [+]

Mature mmu-miR-139-5p

• Accession: MIMAT0000656
• Description: Mus musculus mmu-miR-139-5p mature miRNA
• Sequence: 7 - UCUACAGUGCACGUGUCUCCAG - 28
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

Mature mmu-miR-139-3p

• Accession: MIMAT0004662
• Description: Mus musculus mmu-miR-139-3p mature miRNA
• Sequence: 43 - UGGAGACGCGGCCCUGUUGGAG - 64
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12007417
   Identification of tissue-specific microRNAs from mouse
   "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
   "Curr Biol (2002) 12:735-739


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009