Stem-loop cbr-mir-72

Accession

MI0000751

Description

Caenorhabditis briggsae cbr-mir-72 precursor miRNA

Literature search

1 open access papers mention cbr-mir-72
(1 sentences)

Sequence

1319 reads, 138.0 reads per million, 3 experiments

uggacucgcccgagcuAGGCAGAUGUUGGCAUAGCUGAAugcaaaucagaaaucgaaauucgaaaaguuugaauuucgcgcgcucAGCUUCGCCACAUCGUGCCAUGcguaggcuugagacca
(((.((((((.(.((..(((((((((.(((..((((((.(((...........(((((((((((...))))))))))).))).))))))..)))))))).))))..)).).)))..))).)))

Structure

   a   --   c a  uA    -     U   AU      A   aaaucagaaau           a 
ugg cuc  gcc g gc  GGCA GAUGU GGC  AGCUGA ugc           cgaaauucgaa  
||| |||  ||| | ||  |||| ||||| |||  |||||| |||           ||||||||||| a
acc gag  cgg u cG  CCGU CUACA CCG  UCGAcu gcg           gcuuuaaguuu  
   a   uu   a g  UA    G     -   CU      c   ----------c           g 

Annotation confidence Medium

Comments

This sequence is the predicted C. briggsae homologue of a miRNA cloned from C. elegans (MIR:MI0000043) (Uwe Ohler, pers. comm.).

Genome context

chrII: 14785974-14786096 [-]

Mature cbr-miR-72-5p

• Accession: MIMAT0000694
• Description: Caenorhabditis briggsae cbr-miR-72-5p mature miRNA
• Sequence: 17 - AGGCAGAUGUUGGCAUAGCUGAA - 39
• Evidence: not_experimental

Mature cbr-miR-72-3p

• Accession: MIMAT0053550
• Description: Caenorhabditis briggsae cbr-miR-72-3p mature miRNA
• Sequence: 86 - AGCUUCGCCACAUCGUGCCAUG - 107
• Evidence: not_experimental

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862