Accession
MI0000757
Description
Caenorhabditis elegans
cel-mir-358 precursor miRNA mir-358
Gene
family?
family?
RF00790;
mir-358
Sequence
348
reads,
9
reads per million, 11 experiments
aaacucgcgacggcuggcgACCUGGCCAGGCAUUCCAACUGUcaaacuuacaaagcuuucucgacaAUUGGUAUCCCUGUCAAGGUCUcaauccguucagcgaauucguu
....(((((((((.(((.((((((((.(((.((.((((.((((...................)))).)))).)).)))))).))))))))..)))))..)))).......
....(((((((((.(((.((((((((.(((.((.((((.((((...................)))).)))).)).)))))).))))))))..)))))..)))).......
Structure
---aaac -- -c c - C C U C aaacuuac
ucgc gacgg ugg gACCU GGC AGG AU CCAA UGUc a
|||| ||||| ||| ||||| ||| ||| || |||| |||| a
agcg uugcc acU CUGGA CUG UCC UA GGUU acag a
uugcuua ac ua - A - C U A cucuuucg
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
This miRNA was predicted by computational analysis of C. elegans and C. briggsae, and expression of the mature microRNA confirmed by PCR amplification, cloning and sequencing [1]. The extents of the dominant mature miRNA species are adjusted here in accordance with a large scale cloning and sequencing study [2].
Genome context
chrV: 8580858-8580967 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-358
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature cel-miR-358-5p
| Accession | MIMAT0015120 |
| Description | Caenorhabditis elegans cel-miR-358-5p mature miRNA |
| Sequence | 20 - ACCUGGCCAGGCAUUCCAACUGU - 42 |
| Evidence |
experimental
CLIPseq [4], Illumina [5] |
| Database links |
|
Mature cel-miR-358-3p
| Accession | MIMAT0000700 |
| Description | Caenorhabditis elegans cel-miR-358-3p mature miRNA |
| Sequence | 67 - AUUGGUAUCCCUGUCAAGGUCU - 88 |
| Evidence |
experimental
cloned [1-2], PCR [1], Illumina [3,5], CLIPseq [4] |
| Database links |
|
| Predicted targets |
|
