Stem-loop rno-mir-24-2

Accession

MI0000855

Description

Rattus norvegicus rno-mir-24-2 precursor miRNA

Literature search

39 open access papers mention rno-mir-24-2
(185 sentences)

Sequence

391077 reads, 382 reads per million, 494 experiments

gccucucccugggcuccgccuccuGUGCCUACUGAGCUGAAACAGUugauuccagugcacUGGCUCAGUUCAGCAGGAACAGgaguccagcccccauaggagcuggca
(((.((((..(((((....(((((((.(((.(((((((((..((((..((....))..))))..))))))))).))).)))))))...))))).....))))..))).

Structure

-   -u    ---cu     ccgc       G   A         AA    ug  u 
 gcc  cucc     gggcu    cuccuGU CCU CUGAGCUGA  CAGU  au c
 |||  ||||     |||||    ||||||| ||| |||||||||  ||||  ||  
 cgg  gagg     cccga    gagGACA GGA GACUUGACU  GUca  ug c
a   uc    auacc     -ccu       A   C         CG    cg  a 

Annotation confidence High

Genome context

chr19: 25318863-25318970 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from rno-mir-24-2

Mature rno-miR-24-3p

• Accession: MIMAT0000794
• Description: Rattus norvegicus rno-miR-24-3p mature miRNA
• Sequence: 61 - UGGCUCAGUUCAGCAGGAACAG - 82
• Evidence: experimental ; cloned [1-4], Northern [2], SOLiD [5]

Mature rno-miR-24-2-5p

• Accession: MIMAT0005441
• Description: Rattus norvegicus rno-miR-24-2-5p mature miRNA
• Sequence: 25 - GUGCCUACUGAGCUGAAACAGU - 46
• Evidence: experimental ; cloned [3], SOLiD [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


5. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714