Stem-loop rno-mir-26a

Accession

MI0000857

Description

Rattus norvegicus rno-mir-26a precursor miRNA

Gene family

MIPF0000043; mir-26

Literature search

54 open access papers mention rno-mir-26a
(455 sentences)

Sequence

37435645 reads, 34513 reads per million, 514 experiments

aaggccguggccuugUUCAAGUAAUCCAGGAUAGGCUgugcaggucccaaggggCCUAUUCUUGGUUACUUGCACggggacgcgggccug
.((((((((.((((((.(((((((((.((((((((((.(...........).)))))))))).))))))))).)))))).))).))))).

Structure

a     -   g      U         C          g gcag 
 aggcc gug ccuugU CAAGUAAUC AGGAUAGGCU u    g
 ||||| ||| |||||| ||||||||| |||||||||| |    u
 uccgg cgc ggggCA GUUCAUUGG UCUUAUCCgg g    c
g     g   a      C         U          g aacc 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr8: 127714441-127714530 [+]

Mature rno-miR-26a-5p

• Accession: MIMAT0000796
• Description: Rattus norvegicus rno-miR-26a-5p mature miRNA
• Sequence: 16 - UUCAAGUAAUCCAGGAUAGGCU - 37
• Evidence: experimental ; cloned [1-3], SOLiD [4]

Mature rno-miR-26a-3p

• Accession: MIMAT0017100
• Description: Rattus norvegicus rno-miR-26a-3p mature miRNA
• Sequence: 55 - CCUAUUCUUGGUUACUUGCAC - 75
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714