Stem-loop rno-mir-92a-2

Accession

MI0000879

Description

Rattus norvegicus rno-mir-92a-2 precursor miRNA

Literature search

43 open access papers mention rno-mir-92a-2
(223 sentences)

Sequence

1590272 reads, 2422.0 reads per million, 517 experiments

ugcccauucauccacAGGUGGGGAUUAGUGCCAUUACuuguguuagauaaaaagUAUUGCACUUGUCCCGGCCUGaggaagaaaagaggguu
.((((.(((.(((.(((((.(((((.(((((.(.(((((............))))).)))))).))))).))))).))).)))....)))).

Structure

u    ---a   a   a     G     U     C U     guguu 
 gccc    uuc ucc cAGGU GGGAU AGUGC A UACuu     a
 ||||    ||| ||| ||||| ||||| ||||| | |||||      
 uggg    aag agg GUCCG CCCUG UCACG U AUgaa     g
u    agaa   a   a     G     U     - U     aaaua 

Annotation confidence Not enough data

Genome context

chrX: 140117249-140117340 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-92a-2

Mature rno-miR-92a-2-5p

• Accession: MIMAT0017108
• Description: Rattus norvegicus rno-miR-92a-2-5p mature miRNA
• Sequence: 16 - AGGUGGGGAUUAGUGCCAUUAC - 37
• Evidence: experimental ; SOLiD [4]

Mature rno-miR-92a-2-3p

• Accession: MIMAT0061618
• Description: Rattus norvegicus rno-miR-92a-2-3p mature miRNA
• Sequence: 55 - UAUUGCACUUGUCCCGGCCUG - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68