Stem-loop rno-mir-136

Accession

MI0000909

Description

Rattus norvegicus rno-mir-136 precursor miRNA

Literature search

8 open access papers mention rno-mir-136
(14 sentences)

Sequence

862666 reads, 616 reads per million, 476 experiments

ugagcccucggaggACUCCAUUUGUUUUGAUGAUGGAuucuuaagcucCAUCAUCGUCUCAAAUGAGUCUucagaggguucu
.((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).

Structure

u        g        C     UUU          uuc 
 gagcccuc gaggACUC AUUUG   UGAUGAUGGA   u
 |||||||| |||||||| |||||   ||||||||||   u
 cuugggag cuUCUGAG UAAAC   GCUACUACcu   a
u        a        -     UCU          cga 

Annotation confidence High

Genome context

chr6: 133716761-133716842 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from rno-mir-136

Mature rno-miR-136-5p

• Accession: MIMAT0000842
• Description: Rattus norvegicus rno-miR-136-5p mature miRNA
• Sequence: 15 - ACUCCAUUUGUUUUGAUGAUGGA - 37
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-136-3p

• Accession: MIMAT0004733
• Description: Rattus norvegicus rno-miR-136-3p mature miRNA
• Sequence: 49 - CAUCAUCGUCUCAAAUGAGUCU - 70
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68