Stem-loop rno-mir-153

Accession

MI0000922

Description

Rattus norvegicus rno-mir-153 precursor miRNA

Literature search

99 open access papers mention rno-mir-153
(405 sentences)

Sequence

137645 reads, 197.0 reads per million, 369 experiments

agcgguggccaguGUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAUCauuggaaacugug
.(((((..(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).))))))..))))).

Structure

a     gg      -             GU       -a  aa 
 gcggu  ccaguG UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||  |||||| |||||||||||||  |||||||  ||  a
 uguca  gguuaC AGUGAAAACACUG  ACGUUga  cg  u
g     aa      U             AU       cc  ag 

Annotation confidence High

Genome context

chr6: 145105064-145105150 [+]

Mature rno-miR-153-5p

• Accession: MIMAT0017135
• Description: Rattus norvegicus rno-miR-153-5p mature miRNA
• Sequence: 14 - GUCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-153-3p

• Accession: MIMAT0000855
• Description: Rattus norvegicus rno-miR-153-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGAUC - 74
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249