Stem-loop rno-mir-154

Accession

MI0000923

Description

Rattus norvegicus rno-mir-154 precursor miRNA

Literature search

7 open access papers mention rno-mir-154
(12 sentences)

Sequence

14660 reads, 18 reads per million, 352 experiments

gcggugcuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauucgugacgAAUCAUACACGGUUGACCUAUUuuucaguaccaa
..((((((.((((((((((((.((((((....(((((.........).))))....)))))).)))))))))))).))))))..

Structure

gc      u            U      UGCC    - uuu 
  ggugcu gaagaUAGGUUA CCGUGU    UUCG c   a
  |||||| |||||||||||| ||||||    |||| |   u
  ccauga uuuUUAUCCAGU GGCACA    AAgc g   u
aa      c            U      UACU    a ugc 

Annotation confidence High

Genome context

chr6: 133888586-133888669 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-154

Mature rno-miR-154-5p

• Accession: MIMAT0000856
• Description: Rattus norvegicus rno-miR-154-5p mature miRNA
• Sequence: 15 - UAGGUUAUCCGUGUUGCCUUCG - 36
• Evidence: experimental ; cloned [1-2], SOLiD [3]

Mature rno-miR-154-3p

• Accession: MIMAT0017136
• Description: Rattus norvegicus rno-miR-154-3p mature miRNA
• Sequence: 51 - AAUCAUACACGGUUGACCUAUU - 72
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68