Stem-loop rno-mir-181a-2

Accession

MI0000925

Description

Rattus norvegicus rno-mir-181a-2 precursor miRNA

Literature search

69 open access papers mention rno-mir-181a-2
(313 sentences)

Sequence

35882928 reads, 40656.0 reads per million, 517 experiments

agaugggcaaccaaggcagccuuaagaggacuccauggAACAUUCAACGCUGUCGGUGAGUUugggauucaaaaacaaaaaaaACCACCAACCGUUGACUGUACcuugggauucuua
....((((..(....)..))))...(((((.((((.((.(((.((((((..((.((((.((((..................)))))))).)))))))).))).)).)))).))))).

Structure

agaugggcaaccaaggcagccuuaa     c    u  A   U      CU  C    A    gggauuca 
                         gagga ucca gg ACA UCAACG  GU GGUG GUUu        a
                         ||||| |||| || ||| ||||||  || |||| ||||         
                         uucuu gggu cC UGU AGUUGC  CA CCAC CAaa        a
------------------------a     a    u  A   C      --  A    -    aaaaacaa 

Annotation confidence High

Genome context

chr3: 23150352-23150468 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-181a-2

Mature rno-miR-181a-5p

• Accession: MIMAT0000858
• Description: Rattus norvegicus rno-miR-181a-5p mature miRNA
• Sequence: 39 - AACAUUCAACGCUGUCGGUGAGUU - 62
• Evidence: experimental ; cloned [3-4], SOLiD [4]

Mature rno-miR-181a-2-3p

• Accession: MIMAT0017138
• Description: Rattus norvegicus rno-miR-181a-2-3p mature miRNA
• Sequence: 84 - ACCACCAACCGUUGACUGUAC - 104
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714