Stem-loop rno-mir-193a

Accession

MI0000936

Description

Rattus norvegicus rno-mir-193a precursor miRNA

Literature search

19 open access papers mention rno-mir-193a
(121 sentences)

Sequence

47166 reads, 130 reads per million, 469 experiments

gcggacgggagcugagagcUGGGUCUUUGCGGGCAAGAUGAgggugucaguucAACUGGCCUACAAAGUCCCAGUccucggcuccc
......((((((((((.((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))).))))))))))

Structure

gcggac          a      U     C    A  A    ggu 
      gggagcugag gcUGGG CUUUG GGGC AG UGAg   g
      |||||||||| |||||| ||||| |||| || ||||    
      cccucggcuc UGACCC GAAAC UCCG UC Acuu   u
------          c      U     A    G  A    gac 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chr10: 67065896-67065981 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-193a

Mature rno-miR-193a-5p

• Accession: MIMAT0004736
• Description: Rattus norvegicus rno-miR-193a-5p mature miRNA
• Sequence: 20 - UGGGUCUUUGCGGGCAAGAUGA - 41
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-193a-3p

• Accession: MIMAT0000868
• Description: Rattus norvegicus rno-miR-193a-3p mature miRNA
• Sequence: 54 - AACUGGCCUACAAAGUCCCAGU - 75
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249